PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002865.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 783aa    MW: 87940.5 Da    PI: 9.3877
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002865.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.84.8e-2059157190
                     FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkw 76 
                              +fY +YA +vGF+vr+s+++k  r g++ ++ +vCs+eg+++++k+           + +++r r+++r+gC+ak+ +k++ dg +
  Itr_sc002865.1_g00003.1  59 DFYVRYACTVGFDVRRSTESKD-RVGKVLRKYLVCSREGFKQPTKDVglvgegvgdtSISSKRCRVTNRVGCNAKIILKLMGDGGY 143
                              6*****************9998.6777****************9988********988899999********************** PP

                     FAR1  77 evtkleleHnHela 90 
                               v +le  H+H+l+
  Itr_sc002865.1_g00003.1 144 SVFSLEVRHTHSLC 157
                              *************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.4E-1759157IPR004330FAR1 DNA binding domain
PfamPF105511.4E-16392472IPR018289MULE transposase domain
PROSITE profilePS509669.817569601IPR007527Zinc finger, SWIM-type
PfamPF044342.4E-5573593IPR007527Zinc finger, SWIM-type
SMARTSM005752.5E-5576603IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 783 aa     Download sequence    Send to blast
MFVCASVSDD EGLSGGTGGS NECVMNFSPR GTKYWIPICD EASQPFVGQR FSKLDDGVDF  60
YVRYACTVGF DVRRSTESKD RVGKVLRKYL VCSREGFKQP TKDVGLVGEG VGDTSISSKR  120
CRVTNRVGCN AKIILKLMGD GGYSVFSLEV RHTHSLCSDA AKPFMRMVGD YVDVGATGVD  180
FQSFKRDLMD TSRVVTILKT LFVSSRGAGT LWPRLPRIKR ATIRRLSTQT WTRRTKPWDE  240
RRWLEGNMSR VLREKTVYSC VLGVNGRNRE VTKVAVRDIV HVCVPSRHSL CRETSRSAGF  300
ETSHCNETSN WSTRHRTRVL RDIALVRDLV RDIGLPLESS RVCFGQTRLR GGILSALVML  360
CPSMRRIRLT EYILVCAFMS IAMCTWVVFS GYNLVFIPFT NMDNHKKSVM FAAGFIAKED  420
IDSYVWLLDN FKRAMGNEST YVVTDQDLSL RVAVPRFFTF ARHRFCMWHI MTKVGDKVRA  480
VLTNDQPFRR DLNAIVWDES ITIEQFESKW LQIMEVRLIV KSISRLSSMM YTEIVAGCFE  540
CRVLSFAADD DVKRVEVEGE NGVVCVVVFH IAETTASCSC RMFERVGLLC RHIFLVLKDA  600
HVDSIPACYV VSRWTHDVYK RPIYDIDGVH DASALRGNSS KSAMKEVWND FYSCVALAGD  660
NFDRVSELSP ILKELKLSFV DADSTLGSSV AKFGVIRSFG GLLASSEIVV HPPTVAKNKG  720
SGKRFKIAKE LALEKAAQYT RECATCHKCN GHDSCNCPLN PKSKSNVQSQ SKVKAKSKSK  780
AKA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.19e-18FAR1-related sequence 5